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Workshop Program

The workshop will be held Friday February 22 and Saturday February 23, 2008. On Friday, the workshop will be held at the Donald L. Houston Center in Texas A&M's Research Park. On Saturday, the workshop will be held in the HR Bright building on Texas A&M's main campus. More details will be provided here as they become available.  

 

ABCS 2008 Workshop Program - Friday, February 22, 2008 - Donald L. Houston Center
8:15am Registration Opens
8:50am-9:00am Opening Remarks (110 Houston Center)
G. Kemble Bennett, Vice Chancellor and Dean of Engineering
9:00am-10:00am Keynote: Michael Levitt, Mesoscale Modeling of Macromolecular Machines (110 Houston Center)
Session Chair: Jerry Tsai (Biochemistry & Biophysics, TAMU)
10:00am-10:30am Break
10:30am-12:00pm Protein Motion and Structure (Session 1A - 110 Houston Center)
Session Organizer: Tahir Cagin (Chemical Engineering, TAMU)

Electrostatic Effects in Proteins: Charges and Consequences
Marty Scholtz (Molecular and Cellular Medicine,HSC and Biochemistry & Biophysics, TAMU)
A Relative Packing Approach to Improve Protein Structure Refinement
Jerry Tsai (Biochemistry & Biophysics, TAMU)
Systematic Coarsening of Atomistic Representations in Biopolymers: its Potential for Studying Assembly and Folding/Unfolding Problems
Tahir Cagin (Chemical Engineering, TAMU)

  Assembling the Tree of Life (Session 1B - 108 Houston Center)
Session Organizer: Tiffani Williams (Computer Science, TAMU)

Resolving the Mammalian Tree of Life Using Genomic and Molecular Data
Bill Murphy (Veterinary Integrative Biosciences, TAMU)
Developing resources for analysis of secreted proteins from Magnaporthe oryzae
Daniel Ebbole (Plant Pathology & Microbiology, TAMU)
Fast Approaches to Summarize Large Collections of Evolutionary Trees
Tiffani Williams  (Computer Science, TAMU)

12:00pm-1:30pm Lunch (106 Houston Center)
1:30pm-2:30pm Keynote: Terry Speed, Alternative Splicing in Tumors: Detection and Interpretation (110 Houston Center)
Session Chair: Bani Mallick (Statistics, TAMU)
2:30pm-3:00pm Break
3:00pm-4:30pm Statistical Methods for Genomics Data Analysis (Session 2A - 110 Houston Center)
Session Organizer: Bani Mallick (Statistics, TAMU)

A Stochastic Clustering Algorithm with Applications to Ion Mobility Spectrometry
David Dahl (Statistics, TAMU)
The Normalization of Mass Spectrometry Peak Intensities Using SVD
Alan Dabney (Statistics, TAMU)
Multiple Hypothesis Testing with Homogeneous Control Samples
Faming Liang (Statistics, TAMU)

  Gene & Protein Expression and Regulation (Session 2B - 108 Houston Center)
Session Organizer: Penny Riggs (Animal Science, TAMU)

Mathematical Models of Genomic Regulation: Complexity and Reduction
Ivan Ivanov (Veterinary Physiology and Pharmacology, TAMU)
Genomic Signal Processing
Tim Josserand (Applied Research Labs, UT Austin)
Integration of Genotype Data with Global mRNA and Protein Analyses
Penny Riggs (Animal Science, TAMU)

4:30pm-6:30pm Poster Session and Reception (Houston Center Lobby)
ABCS 2008 Workshop Program - Saturday, February 23, 2008 - HR Bright building
9:15am-9:30am Opening Remarks (124 HR Bright)
Jim Calvin, Interim Vice President for Research, TAMU
Joe Newton, Dean, College of Science, TAMU
9:30am-10:30am Keynote: Ken Dill, Protein Folding Physics and its Application to Protein Structure Prediction (124 HR Bright)
Session Chair: Jim Hu (Biochemistry & Biophysics, TAMU)
10:30am-11:00am Break
11:00am-12:30pm Optimization in Biological Networks (Session 3A - 124 HR Bright)
Session Organizer: Sergiy Butenko (Industrial and Systems Engineering, TAMU)

Cohesive Subgroups in Biological Networks
Balabhaskar Balasundaram (Industrial Engineering & Management, Oklahoma State University)
Partitioning Enzymatic Reactions
Allen Holder (Mathematics, Trinity University)
Path Matching in Biological Networks
Sing-Hoi Sze (Computer Science and Biochemistry & Biophysics, TAMU)

  Computational Biophysics (Session 3B - 131 HR Bright)
Session Organizer: Wonmuk Hwang (Biomedical Engineering, TAMU)

Accelerated Simulations of Protein Folding and Polypeptide Aggregation
Yi-Qin Gao (Chemistry, TAMU)
Novel Empirical Potential Functions and Monte Carlo Sampling Techniques
Jianpeng Ma (Biochemistry and Molecular Biology, Baylor College of Medicine)
Molecular Basis for the Power Stroke of the Kinesin Motor
Wonmuk Hwang (Biomedical Engineering, TAMU)

12:30pm Workshop Closing

 

last modified 2008-02-21 11:36
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